PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01310.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 249aa    MW: 28309.9 Da    PI: 9.3753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01310.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.2e-52141381128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeelvv+yLk+kv +++l++ ++i++vd+++++PwdLp +    eke yfFs+r+ ky++g+r+nrat+sgyWkat
  Rsa1.0_01310.1_g00012.1  14 LPPGFRFHPTDEELVVQYLKRKVFSSPLPA-SIIPDVDVCRADPWDLPGN---LEKERYFFSTREAKYPNGNRSNRATESGYWKAT 95 
                              79****************************.89***************44...4789***************************** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+v+++ +++ vglkktLvfykg+ p+g++tdW+mheyrl
  Rsa1.0_01310.1_g00012.1  96 GIDKRVVTSrGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                              ***99998857777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6010160IPR003441NAC domain
PROSITE profilePS5100559.00914160IPR003441NAC domain
PfamPF023651.8E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDKINLVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSSP LPASIIPDVD VCRADPWDLP  60
GNLEKERYFF STREAKYPNG NRSNRATESG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK  120
GKPPHGSRTD WIMHEYRLSS SPPSSIGPTQ NWVLCRIFLK KRAGDKNEDE GDNRNLRCNN  180
DQLEIITPNQ TEDKTEPIFF DFMRKERTTD LKLLPSSPSS GHASSGVTTE IFSSDEETSS  240
SCNSLRRNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D6e-511216618174NAC domain-containing protein 19
3swp_C6e-511216618174NAC domain-containing protein 19
3swp_B6e-511216618174NAC domain-containing protein 19
3swp_A6e-511216618174NAC domain-containing protein 19
3swm_D6e-511216618174NAC domain-containing protein 19
3swm_C6e-511216618174NAC domain-containing protein 19
3swm_B6e-511216618174NAC domain-containing protein 19
3swm_A6e-511216618174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528170.0AK352817.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131323.11e-161PREDICTED: NAC transcription factor 29-like isoform X1
SwissprotQ9FY931e-144NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0D3B0X11e-159A0A0D3B0X1_BRAOL; Uncharacterized protein
STRINGBra006186.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-131NAC domain containing protein 83